| Protein ZmABI4 | |
|---|---|
|
ZmABI4 is a protein in the ABI3-VP1 family.
|
|
| Information | |
| TF Name: | ZmABI4 |
| Species: | Maize |
| TF Family: | ABI3-VP1 |
| Gene Name(Synonym): | ABI4 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 1 |
Protein ZmABI4
ZmABI4 is a protein in the ABI3-VP1 family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF02362 | |
| Zm00001eb051330_T002 |  |
| Zm00001eb051330_T001 | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d033313 | DAPseq |  |
sequence | fimo | position |
| Zm00001d033313 | DAPseq |  |
sequence | fimo | position |
| Zm00001d033313 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d033313 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmABI4 is the regulator
Interactions where ZmABI4 is the target
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Zm00001eb051330_T002 from maize genome v5
Amino Acid Sequence
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MMKPGERSRERDADFHYSGHDDEKDRYFFKVLVGDFRERLAVPDKFMQHFTRGLVTSSVTLESRCGRSFHVQVAENLGKV
VLQAGWKEFVAAHGLSMGDVLVFKHDGTPRLKVFMFDHSCCEKVPPPCPVKIKREHHVCGGERRETHPEVPSSSCGDASM
TFVTASSSSASPSDDASGEWILSPEDQKPRYVPGYILPNGTYLTCVQMQKLKERVRARTSTIPIYGCTVRKSNIRRGSQN
MAIPRAYADVYLPFEDRTLTLQRCGESWEVQCRIQKGRRGCKRLAQGWRQFAHDNKLQLGDLCLFELLENTSKYTMDVHV
VRAE
MMKPGERSRERDADFHYSGHDDEKDRYFFKVLVGDFRERLAVPDKFMQHFTRGLVTSSVTLESRCGRSFHVQVAENLGKV
VLQAGWKEFVAAHGLSMGDVLVFKHDGTPRLKVFMFDHSCCEKVPPPCPVKIKREHHVCGGERRETHPEVPSSSCGDASM
TFVTASSSSASPSDDASGEWILSPEDQKPRYVPGYILPNGTYLTCVQMQKLKERVRARTSTIPIYGCTVRKSNIRRGSQN
MAIPRAYADVYLPFEDRTLTLQRCGESWEVQCRIQKGRRGCKRLAQGWRQFAHDNKLQLGDLCLFELLENTSKYTMDVHV
VRAE
MMKPGERSRERDADFHYSGHDDEKDRYFFKVLVGDFRERLAVPDKFMQHFTRGLVTSSVTLESRCGRSFHVQVAENLGKV
VLQAGWKEFVAAHGLSMGDVLVFKHDGTPRLKVFMFDHSCCEKVPPPCPVKIKREHHVCGGERRETHPEVPSSSCGDASM
TFVTASSSSASPSDDASGEWILSPEDQKPRYVPGYILPNGTYLTCVQMQKLKERVRARTSTIPIYGCTVRKSNIRRGSQN
MAIPRAYADVYLPFEDRTLTLQRCGESWEVQCRIQKGRRGCKRLAQGWRQFAHDNKLQLGDLCLFELLENTSKYTMDVHV
VRAE
MMKPGERSRERDADFHYSGHDDEKDRYFFKVLVGDFRERLAVPDKFMQHFTRGLVTSSVTLESRCGRSFHVQVAENLGKV
VLQAGWKEFVAAHGLSMGDVLVFKHDGTPRLKVFMFDHSCCEKVPPPCPVKIKREHHVCGGERRETHPEVPSSSCGDASM
TFVTASSSSASPSDDASGEWILSPEDQKPRYVPGYILPNGTYLTCVQMQKLKERVRARTSTIPIYGCTVRKSNIRRGSQN
MAIPRAYADVYLPFEDRTLTLQRCGESWEVQCRIQKGRRGCKRLAQGWRQFAHDNKLQLGDLCLFELLENTSKYTMDVHV
VRAE
MMKPGERSRERDADFHYSGHDDEKDRYFFKVLVGDFRERLAVPDKFMQHFTRGLVTSSVTLESRCGRSFHVQVAENLGKV
VLQAGWKEFVAAHGLSMGDVLVFKHDGTPRLKVFMFDHSCCEKVPPPCPVKIKREHHVCGGERRETHPEVPSSSCGDASM
TFVTASSSSASPSDDASGEWILSPEDQKPRYVPGYILPNGTYLTCVQMQKLKERVRARTSTIPIYGCTVRKSNIRRGSQN
MAIPRAYADVYLPFEDRTLTLQRCGESWEVQCRIQKGRRGCKRLAQGWRQFAHDNKLQLGDLCLFELLENTSKYTMDVHV
VRAE
MMKPGERSRERDADFHYSGHDDEKDRYFFKVLVGDFRERLAVPDKFMQHFTRGLVTSSVTLESRCGRSFHVQVAENLGKV
VLQAGWKEFVAAHGLSMGDVLVFKHDGTPRLKVFMFDHSCCEKVPPPCPVKIKREHHVCGGERRETHPEVPSSSCGDASM
TFVTASSSSASPSDDASGEWILSPEDQKPRYVPGYILPNGTYLTCVQMQKLKERVRARTSTIPIYGCTVRKSNIRRGSQN
MAIPRAYADVYLPFEDRTLTLQRCGESWEVQCRIQKGRRGCKRLAQGWRQFAHDNKLQLGDLCLFELLENTSKYTMDVHV
VRAE
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF02362 |
|
| PF02362 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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CATAGCCCAAGCCCACCCTCGGTGT...
CATAGCCCAAGCCCACCCTCGGTGTCTCCGTTCTTCCACGAGTGTTGGTGGTCACCAAAGCTTCATCTTGGCATCAGGAAGCTGCAGTGTGGTGAAGATGATGAAACCTGGTGAGAGAAGCAGGGAGAGGGATGCTGATTTCCACTATTCGGGTCACGACGATGAGAAGGACAGGTACTTCTTCAAGGTTCTGGTTGGCGATTTCCGTGAACGACTGGCCGTCCCTGACAAATTCATGCAGCACTTCACCAGAGGGCTAGTCACAAGCAGTGTTACGCTAGAATCACGCTGCGGACGCAGTTTCCATGTCCAAGTGGCTGAGAATCTGGGCAAGGTGGTCCTTCAAGCGGGGTGGAAGGAGTTCGTCGCTGCGCATGGCTTGAGCATGGGGGACGTCCTGGTTTTCAAGCACGACGGGACTCCTCGGCTGAAGGTTTTCATGTTCGACCATAGCTGCTGCGAGAAAGTGCCGCCGCCATGCCCTGTCAAGATCAAGCGAGAGCATCATGTCTGTGGCGGAGAGAGAAGGGAGACGCACCCTGAAGTTCCAAGCAGCAGCTGTGGAGATGCTTCCATGACTTTTGTCACCGCTAGCTCGTCGTCAGCCTCCCCCTCCGACGACGCGTCAGGAGAGTGGATATTATCTCCAGAAGACCAGAAACCACGTTACGTTCCAGGTTACATCCTCCCAAATGGAACCTACCTCACCTGTGTGCAGATGCAGAAACTGAAAGAAAGAGTCCGAGCTAGGACTTCTACTATCCCCATCTACGGATGCACCGTGAGGAAGAGCAACATTCGTAGGGGATCTCAGAATATGGCCATACCAAGAGCATATGCTGATGTATACCTACCATTCGAGGACCGAACGCTGACGCTCCAACGCTGCGGCGAGAGCTGGGAGGTGCAGTGTCGGATTCAGAAGGGCAGACGCGGATGCAAAAGGCTCGCGCAAGGGTGGAGGCAGTTTGCTCACGACAACAAGCTGCAGCTGGGAGACCTCTGCCTCTTCGAGCTACTTGAGAACACCAGCAAGTACACGATGGATGTGCATGTCGTTCGCGCGGAATGAAAATTGCATGCACAGGCAGCTGACGCTCTTGGCGCCAGCATAGCTTTTGCAGCAACATGTGGATGGTGGTAGCAGATGCATGCTTGCCCATCCTCTCTGGTTGGGCAATTGGTTAACTCGTGTGTGCCGCCGCCTAAGTTCAGGCTTCAGAGTGTTTAACTTGTGACCCATATTATGCTCCAGCAATCGTTTGAGGACAGAGGTCATCACGATTTGATTTGTCTCAATGATTCGGGTCCAACAAGCGAAATAAAAAAGGGCAGGAAAACAACGATGACTCGGGCAAATCTAAGCATGTGGATCATGTAAAATAGGAGACATGATATTGTAGATGACACAGTAAATGACACTGTTTATAGAGC
GRMZM2G098063_T01 from maize genome v3
Amino Acid Sequence
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MMKPGERSRERDADFHYSGHDDEKDRYFFKVLVGDFRERLAVPDKFMQHFTRGLVTSSVTLESRCGRSFHVQVAENLGKV
VLQAGWKEFVAAHGLSMGDVLVFKHDGTPRLKVFMFDHSCCEKVPPPCPVKIKREHHVCGGERRETHPEVPSSSCGDASM
TFVTASSSSASPSDDASGEWILSPEDQKPRYVPGYILPNGTYLTCVQMQKLKERVRARTSTIPIYGCTVRKSNIRRGSQN
MAIPRAYADVYLPFEDRTLTLQRCGESWEVQCRIQKGRRGCKRLAQGWRQFAHDNKLQLGDLCLFELLENTSKYTMDVHV
VRAE
Nucleotide Sequence
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AGCCCACCCTCGGTGTCTCCGTTCT...
AGCCCACCCTCGGTGTCTCCGTTCTTCCACGAGTGTTGGTGGTCACCAAAGCTTCATCTTGGCATCAGGAAGCTGCAGCTCCCTTTGTTCTGTTCTGGCACGTCCTCGGCATTGCTCCAGTGTGGTGAAGATGATGAAACCTGGTGAGAGAAGCAGGGAGAGGGATGCTGATTTCCACTATTCGGGTCACGACGATGAGAAGGACAGGTACTTCTTCAAGGTTCTGGTTGGCGATTTCCGTGAACGACTGGCCGTCCCTGACAAATTCATGCAGCACTTCACCAGAGGGCTAGTCACAAGCAGTGTTACGCTAGAATCACGCTGCGGACGCAGTTTCCATGTCCAAGTGGCTGAGAATCTGGGCAAGGTGGTCCTTCAAGCGGGGTGGAAGGAGTTCGTCGCTGCGCATGGCTTGAGCATGGGGGACGTCCTGGTTTTCAAGCACGACGGGACTCCTCGGCTGAAGGTTTTCATGTTCGACCATAGCTGCTGCGAGAAAGTGCCGCCGCCATGCCCTGTCAAGATCAAGCGAGAGCATCATGTCTGTGGCGGAGAGAGAAGGGAGACGCACCCTGAAGTTCCAAGCAGCAGCTGTGGAGATGCTTCCATGACTTTTGTCACCGCTAGCTCGTCGTCAGCCTCCCCCTCCGACGACGCGTCAGGAGAGTGGATATTATCTCCAGAAGACCAGAAACCACGTTACGTTCCAGGTTACATCCTCCCAAATGGAACCTACCTCACCTGTGTGCAGATGCAGAAACTGAAAGAAAGAGTCCGAGCTAGGACTTCTACTATCCCCATCTACGGATGCACCGTGAGGAAGAGCAACATTCGTAGGGGATCTCAGAATATGGCCATACCAAGAGCATATGCTGATGTATACCTACCATTCGAGGACCGAACGCTGACGCTCCAACGCTGCGGCGAGAGCTGGGAGGTGCAGTGTCGGATTCAGAAGGGCAGACGCGGATGCAAAAGGCTCGCGCAAGGGTGGAGGCAGTTTGCTCACGACAACAAGCTGCAGCTGGGAGACCTCTGCCTCTTCGAGCTACTTGAGAACACCAGCAAGTACACGATGGATGTGCATGTCGTTCGCGCGGAATGAAAATTGCATGCACAGGCAGCTGACGCTCTTGGCGCCAGCATAGCTTTTGCAGCAACATGTGGATGGTGGTAGCAGATGCATGCTTGCCCATCCTCTCTGGTTGGGCAATTGGTTAACTCGTGTGTGCCGCCGCCTAAGTTCAGGCTTCAGAGTGTTTAACTTGTGACCCATATTATGCTCCAGCAATCGTTTGAGGACAGAGGTCATCACGATTTGATTTGTCTCAATGATTCGGGTCCAACAAGCGAAATAAAAAAGGGCAGGAAAACAACGATGACTCGGGCAAATCTAAGCATGTGGATCATGTAAAATAGGAGACATGATATTGTAGATGACACAGTAAATGACACTGTTTATAGAGCGAATACTTATA
Zm00001d033313_T001 from maize genome v4
Amino Acid Sequence
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MMKPGERSRERDADFHYSGHDDEKDRYFFKVLVGDFRERLAVPDKFMQHFTRGLVTSSVTLESRCGRSFHVQVAENLGKV
VLQAGWKEFVAAHGLSMGDVLVFKHDGTPRLKVFMFDHSCCEKVPPPCPVKIKREHHVCGGERRETHPEVPSSSCGDASM
TFVTASSSSASPSDDASGEWILSPEDQKPRYVPGYILPNGTYLTCVQMQKLKERVRARTSTIPIYGCTVRKSNIRRGSQN
MAIPRAYADVYLPFEDRTLTLQRCGESWEVQCRIQKGRRGCKRLAQGWRQFAHDNKLQLGDLCLFELLENTSKYTMDVHV
VRAE
Nucleotide Sequence
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AGCCCACCCTCGGTGTCTCCGTTCT...
AGCCCACCCTCGGTGTCTCCGTTCTTCCACGAGTGTTGGTGGTCACCAAAGCTTCATCTTGGCATCAGGAAGCTGCAGCTCCCTTTGTTCTGTTCTGGCACGTCCTCGGCATTGCTCCAGTGTGGTGAAGATGATGAAACCTGGTGAGAGAAGCAGGGAGAGGGATGCTGATTTCCACTATTCGGGTCACGACGATGAGAAGGACAGGTACTTCTTCAAGGTTCTGGTTGGCGATTTCCGTGAACGACTGGCCGTCCCTGACAAATTCATGCAGCACTTCACCAGAGGGCTAGTCACAAGCAGTGTTACGCTAGAATCACGCTGCGGACGCAGTTTCCATGTCCAAGTGGCTGAGAATCTGGGCAAGGTGGTCCTTCAAGCGGGGTGGAAGGAGTTCGTCGCTGCGCATGGCTTGAGCATGGGGGACGTCCTGGTTTTCAAGCACGACGGGACTCCTCGGCTGAAGGTTTTCATGTTCGACCATAGCTGCTGCGAGAAAGTGCCGCCGCCATGCCCTGTCAAGATCAAGCGAGAGCATCATGTCTGTGGCGGAGAGAGAAGGGAGACGCACCCTGAAGTTCCAAGCAGCAGCTGTGGAGATGCTTCCATGACTTTTGTCACCGCTAGCTCGTCGTCAGCCTCCCCCTCCGACGACGCGTCAGGAGAGTGGATATTATCTCCAGAAGACCAGAAACCACGTTACGTTCCAGGTTACATCCTCCCAAATGGAACCTACCTCACCTGTGTGCAGATGCAGAAACTGAAAGAAAGAGTCCGAGCTAGGACTTCTACTATCCCCATCTACGGATGCACCGTGAGGAAGAGCAACATTCGTAGGGGATCTCAGAATATGGCCATACCAAGAGCATATGCTGATGTATACCTACCATTCGAGGACCGAACGCTGACGCTCCAACGCTGCGGCGAGAGCTGGGAGGTGCAGTGTCGGATTCAGAAGGGCAGACGCGGATGCAAAAGGCTCGCGCAAGGGTGGAGGCAGTTTGCTCACGACAACAAGCTGCAGCTGGGAGACCTCTGCCTCTTCGAGCTACTTGAGAACACCAGCAAGTACACGATGGATGTGCATGTCGTTCGCGCGGAATGAAAATTGCATGCACAGGCAGCTGACGCTCTTGGCGCCAGCATAGCTTTTGCAGCAACATGTGGATGGTGGTAGCAGATGCATGCTTGCCCATCCTCTCTGGTTGGGCAATTGGTTAACTCGTGTGTGCCGCCGCCTAAGTTCAGGCTTCAGAGTGTTTAACTTGTGACCCATATTATGCTCCAGCAATCGTTTGAGGACAGAGGTCATCACGATTTGATTTGTCTCAATGATTCGGGTCCAACAAGCGAAATAAAAAAGGGCAGGAAAACAACGATGACTCGGGCAAATCTAAGCATGTGGATCATGTAAAATAGGAGACATGATATTGTAGATGACACAGTAAATGACACTGTTTATAGAGCGAATACTTAT
Zm00001eb051330_T001 from maize genome v5
Amino Acid Sequence
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MMKPGERSRERDADFHYSGHDDEKDRYFFKVLVGDFRERLAVPDKFMQHFTRGLVTSSVTLESRCGRSFHVQVAENLGKV
VLQAGWKEFVAAHGLSMGDVLVFKHDGTPRLKVFMFDHSCCEKVPPPCPVKIKREHHVCGGERRETHPEVPSSSCGDASM
TFVTASSSSASPSDDASGEWILSPEDQKPRYVPGYILPNGTYLTCVQMQKLKERVRARTSTIPIYGCTVRKSNIRRGSQN
MAIPRAYADVYLPFEDRTLTLQRCGESWEVQCRIQKGRRGCKRLAQGWRQFAHDNKLQLGDLCLFELLENTSKYTMDVHV
VRAE
Nucleotide Sequence
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CATAGCCCAAGCCCACCCTCGGTGT...
CATAGCCCAAGCCCACCCTCGGTGTCTCCGTTCTTCCACGAGTGTTGGTGGTCACCAAAGCTTCATCTTGGCATCAGGAAGCTGCAGCTCCCTTTGTTCTGTTCTGGCACGTCCTCGGCATTGCTCCAGTGTGGTGAAGATGATGAAACCTGGTGAGAGAAGCAGGGAGAGGGATGCTGATTTCCACTATTCGGGTCACGACGATGAGAAGGACAGGTACTTCTTCAAGGTTCTGGTTGGCGATTTCCGTGAACGACTGGCCGTCCCTGACAAATTCATGCAGCACTTCACCAGAGGGCTAGTCACAAGCAGTGTTACGCTAGAATCACGCTGCGGACGCAGTTTCCATGTCCAAGTGGCTGAGAATCTGGGCAAGGTGGTCCTTCAAGCGGGGTGGAAGGAGTTCGTCGCTGCGCATGGCTTGAGCATGGGGGACGTCCTGGTTTTCAAGCACGACGGGACTCCTCGGCTGAAGGTTTTCATGTTCGACCATAGCTGCTGCGAGAAAGTGCCGCCGCCATGCCCTGTCAAGATCAAGCGAGAGCATCATGTCTGTGGCGGAGAGAGAAGGGAGACGCACCCTGAAGTTCCAAGCAGCAGCTGTGGAGATGCTTCCATGACTTTTGTCACCGCTAGCTCGTCGTCAGCCTCCCCCTCCGACGACGCGTCAGGAGAGTGGATATTATCTCCAGAAGACCAGAAACCACGTTACGTTCCAGGTTACATCCTCCCAAATGGAACCTACCTCACCTGTGTGCAGATGCAGAAACTGAAAGAAAGAGTCCGAGCTAGGACTTCTACTATCCCCATCTACGGATGCACCGTGAGGAAGAGCAACATTCGTAGGGGATCTCAGAATATGGCCATACCAAGAGCATATGCTGATGTATACCTACCATTCGAGGACCGAACGCTGACGCTCCAACGCTGCGGCGAGAGCTGGGAGGTGCAGTGTCGGATTCAGAAGGGCAGACGCGGATGCAAAAGGCTCGCGCAAGGGTGGAGGCAGTTTGCTCACGACAACAAGCTGCAGCTGGGAGACCTCTGCCTCTTCGAGCTACTTGAGAACACCAGCAAGTACACGATGGATGTGCATGTCGTTCGCGCGGAATGAAAATTGCATGCACAGGCAGCTGACGCTCTTGGCGCCAGCATAGCTTTTGCAGCAACATGTGGATGGTGGTAGCAGATGCATGCTTGCCCATCCTCTCTGGTTGGGCAATTGGTTAACTCGTGTGTGCCGCCGCCTAAGTTCAGGCTTCAGAGTGTTTAACTTGTGACCCATATTATGCTCCAGCAATCGTTTGAGGACAGAGGTCATCACGATTTGATTTGTCTCAATGATTCGGGTCCAACAAGCGAAATAAAAAAGGGCAGGAAAACAACGATGACTCGGGCAAATCTAAGCATGTGGATCATGTAAAATAGGAGACATGATATTGTAGATGACACAGTAAATGACACTGTTTATAGAGC
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